Transcript 931121

Transcript

ID CARD

MetamORF ID

931121

ENSMUST00000156794

Name

Pafah1b1-205

Strand

Biotype

retained_intron

Start-end positions

74673950-74724318

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:18472

Aliases

ENSMUSG00000020745,
LIS-1, Lis1, Mdsh,
MGI:109520, MMS10-U, Ms10u,
NCBI:18472, OFF:Pafah1b1, Pafah1b1,
Pafaha

Chr 11

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
304491	48	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
20185	60	TTG ...	LVR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
304303	57	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
1599117	84	GTG ...	VVE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1696853	45	ATG ...	MHF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1694993	36	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
20187	36	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
18966	45	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
450158	102	GTG ...	VRE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
306615	48	ATG ...	MAM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
302012	33	GTG ...	VYG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
21297	69	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
299829	90	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
312145	33	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
934400	39	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
299661	30	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
304889	117	TTG ...	LSC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
419076	297	ACG ...	TSE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1601861	138	GTG ...	VWV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
310115	33	TTG ...	LNA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
297344	54	GTG ...	VLM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
932039	186	ACG ...	TAE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
295964	54	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
933519	279	AGG ...	RAR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
296358	63	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1695003	81	GTG ...	VEC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
17278	57	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
932745	264	ATA ...	IAS ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
447751	60	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
91387	42	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
931120	132	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
310822	60	GTG ...	VDG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1037363	198	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
292086	144	CTG ...	LFH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
1078874	237	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
296062	51	CTG ...	LMT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
1599330	144	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
931180	237	AGG ...	RTE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
308736	174	GTG ...	VGH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Neutrophil
305103	60	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
935220	78	ATC ...	ILP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
934441	246	AAG ...	KEQ ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
308755	96	ATG ...	MKQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil

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