Transcript 415313

Transcript

ID CARD

MetamORF ID

415313

ENSMUST00000156701

Name

Capza2-207

Strand

Biotype

retained_intron

Start-end positions

17637035-17659609

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:12343

Aliases

1110053K06Rik,
AW208808, Cappa2, Capza2,
ENSMUSG00000015733, MGI:106222, NCBI:12343,
OFF:Capza2

Chr 6

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
836422	30	TTG ...	LPI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
69360	45	TTG ...	LLN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
202170	69	ATG ...	MET ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
837720	54	ATG ...	MEN ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
70121	252	TTG ...	LDP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
199085	33	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
203645	54	ATG ...	MII ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
69018	48	ATG ...	MHR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
836129	30	ATG ...	MGS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
836633	30	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
67791	291	TTG ...	LIT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
70231	270	TTG ...	LGN ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
835761	36	TTG ...	LHS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1470102	132	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
70337	60	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, C2C12
837318	57	CTG ...	LIQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
69831	84	GTG ...	VYG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
68525	78	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
205367	42	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
197275	90	TTG ...	LKI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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