Transcript 1043295

Transcript

ID CARD

MetamORF ID

1043295

ENSMUST00000156628

Name

Pbrm1-217

Strand

Biotype

protein_coding

Start-end positions

31025507-31113945

CDS Start-stop positions

31025513-

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:66923

Aliases

2610016F04Rik,
AI507524, BAF180, ENSMUSG00000042323,
MGI:1923998, NCBI:66923, OFF:Pbrm1,
Pb1, Pbrm1

Chr 14

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1614524	57	ATG ...	MSE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
1140981	87	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, v6-5
1139586	138	CTG ...	LSI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
1140640	81	TTG ...	LFR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
1615048	150	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1613093	33	ATG ...	MPV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
1615647	63	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1614829	39	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1612381	108	ATG ...	MLF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1139258	126	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
1615374	30	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1615190	66	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1616226	153	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
1616363	102	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
678507	51	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
469265	144	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
676229	141	GTG ...	VKI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1616105	54	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1615616	72	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1140909	78	ATG ...	MFL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	v6-5
468377	132	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, Neutrophil
469155	141	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
1615627	141	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
675413	57	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, v6-5
675164	48	ATG ...	MTK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1615294	222	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
1139053	72	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	v6-5
1615760	96	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF

Export data