Transcript 276099

Transcript

ID CARD

MetamORF ID

276099

ENSMUST00000156531

Name

Pdha1-204

Strand

Biotype

retained_intron

Start-end positions

160127291-160128965

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:18597

Aliases

ENSMUSG00000031299,
MGI:97532, NCBI:18597, OFF:Pdha1,
Pdha-1, Pdha1

Chr X

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283318	60	TTG ...	LLG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, NSC, v6-5
277832	150	TTG ...	LKL ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
281025	96	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E, v6-5
278391	51	GTG ...	VRP ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
7396	69	CTG ...	LLR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
442633	84	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
1335531	69	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
284241	84	ATG ...	MAW ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1119171	66	TTG ...	LVL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
280767	171	CTG ...	LWK ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
283755	99	GTG ...	VRT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
765217	120	CTG ...	LAC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Neutrophil
276098	45	TTG ...	LPW ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
7248	66	TTG ...	LRE ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1034902	138	CTG ...	LGA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, R1E
1034746	144	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
279606	30	GTG ...	VEI ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, v6-5
281225	33	CTG ...	LFD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, NSC, v6-5
1592454	33	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF

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