Transcript 9370 | MetamORF

Transcript

ID CARD

MetamORF ID

9370

ENSMUST00000156217

Name

Rtn4-209

Strand

Biotype

processed_transcript

Start-end positions

29733698-29742435

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:68585

Aliases

1110020G17Rik,
AA407876, AA409940, AA960376,
ASY, C130026I10Rik, ENSMUSG00000020458,
MGI:1915835, mKIAA0886, mKIAA4153,
NCBI:68585, NgA, NOGO,
Nogo-A, Nogo-B, Nogo-C,
NSP-CL, OFF:Rtn4, Rtn4

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293438	63	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
18138	144	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Testis
23400	204	TTG ...	LVQ ...	Ribo-seq	TTG		20	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
9369	147	TTG ...	LRR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
18417	141	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
21649	147	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
1292405	120	ATT ...	IVS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
19047	93	TTG ...	LAL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
19650	57	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1294548	156	ATA ...	IKE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
9484	108	CTG ...	LKA ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
9575	234	TTG ...	LES ...	Ribo-seq	TTG		21	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1036533	63	TTG ...	LFN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
419253	30	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
418882	63	AGG ...	RIY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
419520	54	ATT ...	IYL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	C2C12
302341	105	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1295734	144	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
20924	93	TTG ...	LMW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
23126	168	GTG ...	VNS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
19037	87	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Testis
91163	135	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
17496	216	TTG ...	LES ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
308110	57	TTG ...	LPY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
91369	78	GTG ...	VTI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
8473	60	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
21582	129	GTG ...	VFS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Testis
418991	57	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
293239	96	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
21344	48	GTG ...	VIQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
307639	84	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
17436	96	GTG ...	VLM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
1290378	108	ACG ...	TAY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14

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