Transcript 420174

Transcript

ID CARD

MetamORF ID

420174

ENSMUST00000156213

Name

Ralb-203

Strand

Biotype

retained_intron

Start-end positions

119481133-119504794

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:64143

Aliases

5730472O18Rik,
ENSMUSG00000004451, MGI:1927244, NCBI:64143,
OFF:Ralb, Ralb

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32815	87	CTG ...	LPT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
965892	159	ATC ...	IDW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1180450	138	CTG ...	LER ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
642988	123	CTG ...	LSV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
420914	102	GTG ...	VRI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
1306269	63	ACG ...	TAP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1303372	66	AGG ...	RAP ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1305670	204	AAG ...	KSQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1309835	210	AAG ...	KGK ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
476456	60	ATG ...	MTN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
575580	33	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
420173	108	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14

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