Transcript 368127

Transcript

ID CARD

MetamORF ID

368127

ENSMUST00000156089

Name

Abcc1-211

Strand

Biotype

retained_intron

Start-end positions

14402360-14420743

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:17250

Aliases

Abcc1,
Abcc1a, Abcc1b, ENSMUSG00000023088,
Mdrap, MGI:102676, MRP,
Mrp1, NCBI:17250, OFF:Abcc1

Chr 16

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
370358	84	TTG ...	LNK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
372942	174	TTG ...	LDV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
369353	114	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
368784	87	GTG ...	VAV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
371388	45	CTG ...	LVN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
374572	36	CTG ...	LMM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
374100	57	CTG ...	LYK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
374024	51	GTG ...	VMA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
373596	111	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
695703	129	GTG ...	VHG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1453543	81	GTG ...	VMI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
371155	108	CTG ...	LFK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
373023	192	GTG ...	VND ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
375185	48	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
369045	99	GTG ...	VLA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
371638	108	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1146999	156	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1146985	168	GTG ...	VNE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1148723	147	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
374971	222	GTG ...	VYA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
370447	42	GTG ...	VNN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
373856	99	GTG ...	VLY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
373893	96	CTG ...	LAG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
375858	123	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
375383	57	GTG ...	VVP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
368126	207	TTG ...	LII ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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