Transcript 47372 | MetamORF

Transcript

ID CARD

MetamORF ID

47372

ENSMUST00000155844

Name

Mtx2-203

Strand

Biotype

retained_intron

Start-end positions

74825830-74868814

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:53375

Aliases

1500012G02Rik,
ENSMUSG00000027099, MGI:1859652, Mtx2,
NCBI:53375, OFF:Mtx2

Chr 2

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
47719	129	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
110663	78	TTG ...	LDE ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, NSC, Spleen_B_cell, v6-5
499412	42	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
46325	30	CTG ...	LKM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Spleen_B_cell, v6-5
47371	246	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1637263	48	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
48565	231	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
113444	33	ATG ...	MGW ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, NSC
103672	75	GTG ...	VGN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, v6-5
733769	60	GTG ...	VSE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, v6-5
493683	30	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
740160	48	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, NSC, v6-5
968565	108	AAG ...	KRS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
108388	72	CTG ...	LSK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
95510	36	GTG ...	VMG ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, NSC, Spleen_B_cell, v6-5
116530	51	TTG ...	LQL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, Spleen_B_cell, v6-5
96417	57	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
735840	33	CTG ...	LTM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, NSC

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