Transcript 367943

Transcript

ID CARD

MetamORF ID

367943

ENSMUST00000155611

Name

Dgcr2-207

Strand

Biotype

retained_intron

Start-end positions

17849311-17891649

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:13356

Aliases

9930034O06Rik,
Dgcr2, DGS-C, Dgsc,
ENSMUSG00000003166, Idd, Lan,
MGI:892866, mKIAA0163, NCBI:13356,
OFF:Dgcr2, Sez12

Chr 16

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
370135	87	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
369003	72	CTG ...	LRF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
371509	81	ATG ...	MKA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
375165	111	GTG ...	VNG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
375753	60	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
33336	69	GTG ...	VQP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
372678	87	CTG ...	LQA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
369301	96	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
368710	60	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
369249	96	GTG ...	VGG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
34279	87	TTG ...	LFY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
370020	90	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371475	63	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
370782	222	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
369429	69	TTG ...	LIS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
475752	30	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1576256	84	AAG ...	KAD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	MEF
374980	228	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
370532	102	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
372381	42	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
372911	51	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
372964	51	ATG ...	MAH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
374654	33	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
372655	48	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
374448	45	GTG ...	VER ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
371765	78	CTG ...	LGW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
375174	30	CTG ...	LQI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
33971	48	ATG ...	MSR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
374268	63	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
371664	72	GTG ...	VLI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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