Transcript 779962

Transcript

ID CARD

MetamORF ID

779962

ENSMUST00000155587

Name

Gls-216

Strand

Biotype

protein_coding

Start-end positions

52185280-52212209

CDS Start-stop positions

52187824-

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:14660

Aliases

6330442B14,
AI314027, B230365M23Rik, ENSMUSG00000026103,
Gls, MGI:95752, NCBI:14660,
OFF:Gls

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
287658	45	TTG ...	LVF ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF	Brain, MEF, v6-5
1172139	66	GTG ...	VFS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, v6-5
947746	48	ATT ...	ILV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
129899	78	CTG ...	LVM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	B_cell, MEF, v6-5
155346	36	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	MEF, v6-5
450265	48	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
410102	45	CTG ...	LVK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
111932	84	GTG ...	VAC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	Brain, MEF, v6-5
774440	45	TTG ...	LDH ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	MEF, v6-5
1618203	33	CTG ...	LSQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF
321662	42	GTG ...	VKE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	MEF
127763	66	ATG ...	MLD ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	B_cell, MEF, v6-5
361917	39	TTG ...	LFL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	E14, MEF, v6-5
127099	51	ATG ...	MQR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	B_cell, MEF, v6-5
1619348	42	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
349056	36	CTG ...	LNE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	MEF, v6-5
967020	87	ATA ...	IRW ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
120903	63	TTG ...	LDS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	B_cell, MEF
295445	48	TTG ...	LQK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	MEF, v6-5
971288	48	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
300404	132	TTG ...	LDY ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	E14, MEF, v6-5
300188	63	GTG ...	VVS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	Brain, MEF
494309	87	TTG ...	LTR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	Brain, MEF, v6-5
1595464	45	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
146735	72	ATG ...	MNM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF, v6-5
777765	30	ATG ...	MRV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	MEF, v6-5
493185	69	GTG ...	VLR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	Brain, E14, MEF, v6-5
104398	75	GTG ...	VSP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF	B_cell, MEF, v6-5
406695	33	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	MEF, NSC, v6-5
296503	66	ATG ...	MVV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain, MEF
327455	30	GTG ...	VLR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, v6-5
302660	36	CTG ...	LQN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Brain, MEF
119635	75	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF, v6-5
375659	42	GTG ...	VAC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	Brain, MEF, v6-5
972099	90	ATT ...	ILV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC

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