Transcript 19567 | MetamORF

Transcript

ID CARD

MetamORF ID

19567

ENSMUST00000155566

Name

Mtmr3-207

Strand

Biotype

processed_transcript

Start-end positions

4480875-4488366

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:74302

Aliases

1700092A20Rik,
AI255150, AW557713, ENSMUSG00000034354,
FYVE-DSP1, MGI:1921552, mKIAA0371,
Mtmr3, NCBI:74302, OFF:Mtmr3,
ZFYVE10

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19566	90	GTG ...	VCK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
293599	111	GTG ...	VET ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
1289913	177	GTG ...	VGM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
23787	237	CTG ...	LAA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Spleen_B_cell, Testis
453983	69	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1291788	84	AAG ...	KSC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
447113	81	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
303667	54	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
91531	270	TTG ...	LHH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
1292026	120	ATG ...	MQK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
452602	102	TTG ...	LKK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
21932	144	CTG ...	LRQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
1291199	276	AGG ...	RNL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1291339	114	TTG ...	LNP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
453004	42	TTG ...	LYF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
91091	171	GTG ...	VYT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
19731	255	CTG ...	LNS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell, Testis
303222	42	CTG ...	LRF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
647737	30	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
91565	285	TTG ...	LYS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Spleen_B_cell, Testis
91111	192	CTG ...	LDD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
311835	96	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
90967	33	CTG ...	LDK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
302247	69	TTG ...	LCQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain

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