Transcript 294419

Transcript

ID CARD

MetamORF ID

294419

ENSMUST00000155276

Name

Fasn-203

Strand

Biotype

retained_intron

Start-end positions

120807547-120808605

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:14104

Aliases

A630082H08Rik,
ENSMUSG00000025153, FAS, Fasn,
MGI:95485, NCBI:14104, OFF:Fasn

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1839133	36	CTG ...	LAE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
991439	84	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
1037160	288	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
445960	42	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
1078889	219	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
294418	87	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
453539	78	TTG ...	LLP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
308225	90	TTG ...	LRV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
448929	63	GTG ...	VPR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
453340	42	CTG ...	LIS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1841896	135	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1079778	276	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1037494	123	GTG ...	VSV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1079447	117	GTG ...	VHI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1078921	138	GTG ...	VCD ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1079563	84	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
454216	117	GTG ...	VTG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
450260	102	CTG ...	LCT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1079628	234	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1037278	297	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
299277	69	CTG ...	LES ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
298323	57	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
302836	84	GTG ...	VTT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
648282	75	CTG ...	LPC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
1079891	264	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
1341681	57	GTG ...	VAW ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1079394	204	GTG ...	VSF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E

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