Transcript 768952

Transcript

ID CARD

MetamORF ID

768952

ENSMUST00000155243

Name

Smarcd2-206

Strand

Biotype

processed_transcript

Start-end positions

106265312-106272965

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:83796

Aliases

AW322457,
Baf60b, ENSMUSG00000078619, MGI:1933621,
NCBI:83796, OFF:Smarcd2, Smarcd2

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
775383	81	CTG ...	LAC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
447882	93	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
646977	36	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
19325	75	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
90960	147	TTG ...	LQV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
448222	114	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
419123	84	CTG ...	LEY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
773451	147	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
91817	141	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
773367	33	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
644037	45	TTG ...	LAQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
769322	60	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
770850	81	ATG ...	MEI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
775288	153	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
771799	75	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
419572	48	CTG ...	LQR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E, v6-5
1596388	51	TTG ...	LSW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
769945	75	GTG ...	VKR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
646745	36	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell

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