Transcript 55921 | MetamORF

Transcript

ID CARD

MetamORF ID

55921

ENSMUST00000155181

Name

Eif2b3-207

Strand

Biotype

processed_transcript

Start-end positions

117067463-117087306

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:108067

Aliases

1190002P15Rik,
Eif2b3, ENSMUSG00000028683, MGI:1313286,
NCBI:108067, OFF:Eif2b3

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
825197	126	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1228356	240	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
55920	36	GTG ...	VIV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Testis
826415	72	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
146938	45	GTG ...	VSY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1229789	99	ATA ...	IHK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1231091	30	ACG ...	TNE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
61289	120	GTG ...	VIE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Testis
59092	30	GTG ...	VGN ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Testis
1226348	186	ACG ...	TSI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1232601	69	AGG ...	RIE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1684414	90	TTG ...	LER ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
1227899	36	ATT ...	IHQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
59767	87	TTG ...	LVG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Testis
149296	30	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
1684463	57	TTG ...	LAH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
823650	126	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
515582	60	CTG ...	LSP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell, v6-5
1684377	63	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
822294	117	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
823198	51	TTG ...	LEV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
822990	120	CTG ...	LIA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
823999	30	CTG ...	LFG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1230869	30	AAG ...	KPK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1231027	75	ATT ...	IVN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
822210	45	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1228422	33	ATC ...	IVG ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
825383	114	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell

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