Transcript 446413

Transcript

ID CARD

MetamORF ID

446413

ENSMUST00000155027

Name

Myo1c-210

Strand

Biotype

retained_intron

Start-end positions

75670276-75671727

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:17913

Aliases

C80397,
ENSMUSG00000017774, MGI:106612, mm1beta,
MMIb, Myo1c, MYO1E,
myr2, NCBI:17913, NMI,
OFF:Myo1c

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
446546	129	GTG ...	VVK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
453775	81	CTG ...	LLT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
447782	135	GTG ...	VPV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
1395146	63	GTG ...	VVI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
447493	105	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
448413	90	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
446412	60	GTG ...	VWK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
453796	120	CTG ...	LQQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
1393354	54	GTG ...	VED ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
452616	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
8433	30	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
449422	78	CTG ...	LCM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell

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