Transcript 296981

Transcript

ID CARD

MetamORF ID

296981

ENSMUST00000154896

Name

Atp6v0a1-209

Strand

Biotype

processed_transcript

Start-end positions

101009452-101044823

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:11975

Aliases

AA959968,
ATP6a1, Atp6n1, Atp6n1a,
Atp6v0a1, Atpv0a1, ENSMUSG00000019302,
MGI:103286, NCBI:11975, OFF:Atp6v0a1,
Vpp-1, Vpp1

Chr 11

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305370	156	CTG ...	LVI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1126085	216	CTG ...	LNI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1484883	45	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
313243	90	CTG ...	LVM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, NSC
447403	57	TTG ...	LPR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
298003	42	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
1600571	42	GTG ...	VNY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1127568	69	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
1122604	63	CTG ...	LNI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
309352	33	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1124093	135	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1125391	60	CTG ...	LTE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
319564	84	ATG ...	MQC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, NSC
1037105	111	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
1128052	126	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1123553	150	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1293066	150	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1128452	66	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
311103	114	CTG ...	LFS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
449356	45	TTG ...	LSA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
295496	87	CTG ...	LIH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1126587	72	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
296980	39	CTG ...	LDS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
304851	111	CTG ...	LVH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
936311	63	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1127464	81	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1127599	39	CTG ...	LFG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
8813	33	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
8945	36	GTG ...	VPD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
649257	33	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1292231	51	AGG ...	RQL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
304554	54	GTG ...	VFP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
303808	168	TTG ...	LFG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1601201	30	CTG ...	LYS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1122392	48	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1290036	75	ATT ...	IFS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
306098	45	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
1127084	99	CTG ...	LTF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, NSC, v6-5
1291616	84	ATC ...	IRR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
317721	69	CTG ...	LDR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, NSC
295423	30	GTG ...	VDS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1121473	117	GTG ...	VMF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
8764	60	GTG ...	VQY ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1124095	123	CTG ...	LMG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5

Export data