Transcript 50712 | MetamORF

Transcript

ID CARD

MetamORF ID

50712

ENSMUST00000154784

Name

Orc4-212

Strand

Biotype

processed_transcript

Start-end positions

48905316-48949231

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:26428

Aliases

ENSMUSG00000026761,
MGI:1347043, mMmORC4, NCBI:26428,
OFF:Orc4, Orc4, Orc4l,
Orc4P

Chr 2

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
742001	141	CTG ...	LQN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
112481	42	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
494510	36	TTG ...	LPD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
48406	168	TTG ...	LEL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
111092	69	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
112314	87	TTG ...	LSY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
110749	162	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
123045	30	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
51246	240	GTG ...	VKS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
98293	57	CTG ...	LQN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
108597	96	TTG ...	LDN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
493906	63	GTG ...	VNI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
95906	60	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
113549	30	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
119564	72	GTG ...	VLE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, v6-5
1213233	42	ATA ...	IRL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
496589	99	GTG ...	VGC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	B_cell
14832	45	CTG ...	LYS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
50711	267	GTG ...	VYN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
45881	99	TTG ...	LKI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
51307	261	TTG ...	LEL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, R1E, Testis, v6-5
498000	66	GTG ...	VVN ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	B_cell
96227	36	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
15999	33	TTG ...	LDH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
50726	177	TTG ...	LKI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
114852	84	GTG ...	VLE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Spleen_B_cell
110358	33	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
108908	183	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
45266	150	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
44423	108	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain

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