Transcript 49792 | MetamORF

Transcript

ID CARD

MetamORF ID

49792

ENSMUST00000154709

Name

Ube2l6-203

Strand

Biotype

processed_transcript

Start-end positions

84802703-84810335

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:56791

Aliases

2810489I21Rik,
ENSMUSG00000027078, MGI:1914500, NCBI:56791,
OFF:Ube2l6, RIG-B, Ubce8,
UBCH8, Ubcm8, Ube2l6

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45573	129	GTG ...	VSK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
860363	42	ATG ...	MPM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
495618	30	CTG ...	LCV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
864027	126	GTG ...	VTM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
47035	114	CTG ...	LEE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
51219	210	GTG ...	VCL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, R1E, Spleen_B_cell, Testis
49791	261	TTG ...	LRF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, R1E, Spleen_B_cell, Testis
50674	213	CTG ...	LVC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, R1E, Spleen_B_cell, Testis
860343	150	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
46766	135	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
864272	108	TTG ...	LCG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
47833	96	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
862488	30	TTG ...	LCG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
860780	69	ATG ...	MAS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver
45360	102	GTG ...	VRL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
44012	78	CTG ...	LTQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
44939	150	TTG ...	LEA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
861846	48	GTG ...	VTM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
860723	36	ATG ...	MCL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
862548	90	TTG ...	LIR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
864298	120	ATG ...	MPM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver
494176	195	GTG ...	VRI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
48740	132	CTG ...	LVS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
864285	114	ATG ...	MCL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver
862542	42	TTG ...	LIS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver
51272	204	CTG ...	LPL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, Liver, R1E, Spleen_B_cell, Testis

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