Transcript 121044

Transcript

ID CARD

MetamORF ID

121044

ENSMUST00000154706

Name

Lnpk-212

Strand

Biotype

processed_transcript

Start-end positions

74551368-74578916

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:69605

Aliases

2310011O18Rik,
4921514L11Rik, 9530051D01Rik, AI666268,
ENSMUSG00000009207, Lnp, Lnpk,
Lnpk1, MGI:1918115, NCBI:69605,
OFF:Lnpk, Ul, ulnaless

Chr 2

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
121627	177	CTG ...	LFT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, v6-5
123121	258	TTG ...	LEE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, R1E, v6-5
968916	45	ACG ...	TPR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
968009	87	AAG ...	KFL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
121043	153	TTG ...	LWY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, v6-5
966159	63	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
968412	81	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
730611	36	ATG ...	MIF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1054275	75	TTG ...	LWY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
814070	99	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
966997	57	ATT ...	IFS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
125521	228	TTG ...	LQK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Neutrophil, R1E, v6-5
125391	159	GTG ...	VYL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, v6-5
1051866	99	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
44214	81	GTG ...	VYL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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