Transcript 196426

Transcript

ID CARD

MetamORF ID

196426

ENSMUST00000154698

Name

Strap-203

Strand

Biotype

processed_transcript

Start-end positions

137745040-137748753

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:20901

Aliases

AW557906,
C78091, C79202, ENSMUSG00000030224,
MGI:1329037, NCBI:20901, OFF:Strap,
Strap, Unrip

Chr 6

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
196425	54	GTG ...	VEK ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
196623	60	TTG ...	LRV ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
199620	93	CTG ...	LRL ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
581764	162	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
834986	63	CTG ...	LYK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil
206018	63	TTG ...	LLR ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1514395	81	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
204739	162	CTG ...	LEP ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1093348	72	CTG ...	LFF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
201638	108	CTG ...	LRP ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
203309	117	TTG ...	LKL ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5

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