Transcript 26684 | MetamORF

Transcript

ID CARD

MetamORF ID

26684

ENSMUST00000154564

Name

H2afy-207

Strand

Biotype

processed_transcript

Start-end positions

56104441-56134825

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:26914

Aliases

ENSMUSG00000015937,
H2AF12M, H2afy, Macroh2a1,
MGI:1349392, mH2a1, NCBI:26914,
OFF:Macroh2a1

Chr 13

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1041224	234	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1040877	246	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
26683	135	CTG ...	LAG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
27229	138	CTG ...	LIC ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
27317	186	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
27466	99	CTG ...	LWD ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
27627	219	GTG ...	VSC ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
27720	165	ATG ...	MCP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
1041780	285	ATG ...	MTD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
463632	99	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
27521	60	GTG ...	VGA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
27181	177	CTG ...	LSP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
1041531	249	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
26817	171	CTG ...	LTM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
27599	141	CTG ...	LEL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
27196	183	CTG ...	LGL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
27682	147	GTG ...	VSS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
1042165	204	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
27568	114	GTG ...	VGR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5
942823	30	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
26786	189	CTG ...	LFL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
335664	48	GTG ...	VYM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil
27256	177	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, Testis, v6-5

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