Transcript 22335 | MetamORF

Transcript

ID CARD

MetamORF ID

22335

ENSMUST00000153971

Name

Vmp1-208

Strand

Biotype

processed_transcript

Start-end positions

86585272-86602295

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:75909

Aliases

3110098I04Rik,
4930579A11Rik, AI787464, ENSMUSG00000018171,
MGI:1923159, mir-21a, NCBI:75909,
ni-2, OFF:Vmp1, Tango5,
Tmem49, Vmp1

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
937088	297	ATA ...	IVT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1601138	45	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
23232	198	CTG ...	LEA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, MEF, NSC, R1E, v6-5
291790	117	ATG ...	MCL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell, v6-5
303630	63	TTG ...	LSC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, Spleen_B_cell
91875	96	GTG ...	VCY ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
17934	111	CTG ...	LVV ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
22334	222	CTG ...	LQK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, R1E, Testis, v6-5
300823	144	TTG ...	LFC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
21065	30	GTG ...	VEQ ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
17806	81	CTG ...	LSI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
24149	273	GTG ...	VEQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, v6-5
303285	96	TTG ...	LRS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, v6-5
312364	81	TTG ...	LQW ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
90898	108	GTG ...	VVA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Spleen_B_cell, v6-5

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