Transcript 49511 | MetamORF

Transcript

ID CARD

MetamORF ID

49511

ENSMUST00000153246

Name

Trpc4ap-210

Strand

Biotype

processed_transcript

Start-end positions

155634745-155637736

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:56407

Aliases

4833429F06Rik,
D2Ertd113e, ENSMUSG00000038324, mFLJ00177,
MGI:1930751, NCBI:56407, OFF:Trpc4ap,
Trpc4ap, Trrp4ap, truss

Chr 2

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
116897	90	CTG ...	LYQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
101393	102	GTG ...	VSI ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF
1209041	129	ATC ...	ISF ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1208543	135	ACG ...	TER ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
49510	30	GTG ...	VQT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, NSC, Testis
1011371	102	CTG ...	LLN ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
741165	174	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
45727	99	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1010031	114	CTG ...	LSE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14
47892	114	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1217115	300	ATA ...	ISQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1010668	78	GTG ...	VPT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14
105690	90	TTG ...	LNP ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF
51339	243	GTG ...	VQT ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1212311	87	ATA ...	ISQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
813194	198	CTG ...	LVI ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14
1460086	78	TTG ...	LPT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
811671	183	CTG ...	LAR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
813055	144	CTG ...	LLQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14
970208	258	ATC ...	INI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
809063	189	CTG ...	LML ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14
46263	75	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1010245	78	CTG ...	LRF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
50230	291	GTG ...	VPT ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1370201	99	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
808250	150	CTG ...	LRL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14
44778	81	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
45658	96	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1009334	54	CTG ...	LHK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
1008548	81	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
104714	93	TTG ...	LLN ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF
112433	72	CTG ...	LEG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
812719	162	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
1162443	30	CTG ...	LCH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
811506	156	CTG ...	LYL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14
101655	45	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF

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