Transcript 32283 | MetamORF

Transcript

ID CARD

MetamORF ID

32283

ENSMUST00000152967

Name

Tpr-214

Strand

Biotype

retained_intron

Start-end positions

150438932-150449927

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:108989

Aliases

2610029M07Rik,
C77892, ENSMUSG00000006005, MGI:1922066,
NCBI:108989, OFF:Tpr, Tpr

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1037085	111	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
413203	51	ATC ...	INR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
1047672	51	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
87587	42	GTG ...	VPH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E, Testis
1039568	69	TTG ...	LDH ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
90392	45	GTG ...	VVP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E, Testis
834816	36	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
1075324	60	ATG ...	MKE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1041522	117	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
709075	96	TTG ...	LMM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
802808	30	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
342925	45	ATG ...	MMK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
775360	51	ATG ...	MKK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1039464	105	ATG ...	MKK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1078618	45	GTG ...	VQM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1039825	72	GTG ...	VKI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
798834	39	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
597158	54	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
682925	93	ATG ...	MMK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
667881	90	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
32282	69	CTG ...	LTI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
365340	36	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
1041121	108	ATG ...	MMK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil

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