Transcript 84074 | MetamORF

Transcript

ID CARD

MetamORF ID

84074

ENSMUST00000152535

Name

Map2k1-203

Strand

Biotype

processed_transcript

Start-end positions

64187289-64195678

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:26395

Aliases

ENSMUSG00000004936,
Map2k1, MAPKK1, Mek1,
MEKK1, MGI:1346866, NCBI:26395,
OFF:Map2k1, Prkmk1

Chr 9

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
268581	30	GTG ...	VGT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Spleen_B_cell, v6-5
261067	108	GTG ...	VNS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell, v6-5
254860	54	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, v6-5
267352	72	TTG ...	LFS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
272315	294	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
269249	75	CTG ...	LQH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell, v6-5
6769	33	TTG ...	LSC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Spleen_B_cell, v6-5
265943	69	ATG ...	MFA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
1272148	45	GTG ...	VGR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
262809	93	CTG ...	LEL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Spleen_B_cell
262703	72	ATG ...	MPC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Spleen_B_cell
84073	147	CTG ...	LVE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell, Testis, v6-5
1031683	48	TTG ...	LLD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
266301	66	ATG ...	MEW ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell, v6-5
261326	33	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
922315	45	TTG ...	LDY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14
84225	180	GTG ...	VQS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis
263958	69	GTG ...	VEG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Spleen_B_cell
85585	144	GTG ...	VEM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis
258604	84	CTG ...	LFG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Spleen_B_cell
436228	36	GTG ...	VEY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5

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