Transcript 16685 | MetamORF

Transcript

ID CARD

MetamORF ID

16685

ENSMUST00000152427

Name

Hadh-202

Strand

Biotype

retained_intron

Start-end positions

131245101-131272024

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:15107

Aliases

AA409008,
AU019341, AW742602, ENSMUSG00000027984,
Hadh, Hadhsc, HCDH,
MGI:96009, NCBI:15107, OFF:Hadh,
Schad

Chr 3

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
864864	87	GTG ...	VTV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
52724	39	TTG ...	LPA ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, Testis, v6-5
865497	135	GTG ...	VVH ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, Neutrophil, NSC, R1E
52535	135	TTG ...	LQI ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, R1E, Testis, v6-5
1220024	81	AAG ...	KNE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1218431	111	ATC ...	IRG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
53248	135	TTG ...	LVD ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
17183	84	CTG ...	LKN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Neutrophil, Skin_tumor, Testis
52442	111	CTG ...	LAK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, R1E, Testis, v6-5
16988	99	GTG ...	VEN ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, Skin_tumor, Testis
51904	114	GTG ...	VVE ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, Neutrophil, R1E, Testis
53011	132	GTG ...	VHS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, Neutrophil, NSC, R1E, Testis
16883	90	CTG ...	LKL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, Neutrophil, Skin_tumor, Testis
53023	69	GTG ...	VFL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, Liver, NSC, Testis
53613	99	CTG ...	LIK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
16684	30	CTG ...	LEM ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, v6-5
53349	72	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
502996	60	ATG ...	MRH ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, NSC, v6-5
53737	117	CTG ...	LVV ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
1219102	60	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
52713	36	TTG ...	LLA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, R1E, Testis, v6-5
53418	33	CTG ...	LAS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, R1E, Testis, v6-5
52283	132	GTG ...	VDQ ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
54377	30	CTG ...	LRR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Testis, v6-5
1220249	87	AAG ...	KLK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
54283	165	GTG ...	VTR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, R1E, Testis, v6-5
53848	60	ATG ...	MPP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, R1E, Testis, v6-5
54764	138	CTG ...	LPF ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, v6-5
54539	150	TTG ...	LRS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, R1E, Testis, v6-5
537469	183	GTG ...	VEK ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
536991	39	CTG ...	LPR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, v6-5
54361	111	GTG ...	VEA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, R1E, Testis
752291	171	CTG ...	LSC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E
1221783	159	AGG ...	RQF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14

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