Transcript 50407 | MetamORF

Transcript

ID CARD

MetamORF ID

50407

ENSMUST00000152178

Name

Rif1-208

Strand

Biotype

processed_transcript

Start-end positions

52112133-52122381

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:51869

Aliases

5730435J01Rik,
6530403D07Rik, AU016181, AW549474,
D2Ertd145e, ENSMUSG00000036202, MGI:1098622,
NCBI:51869, OFF:Rif1, Rif1

Chr 2

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1167016	39	TTG ...	LEQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5
496981	102	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
1166832	45	CTG ...	LNL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
111911	210	TTG ...	LIE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1164594	180	TTG ...	LSK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1166587	300	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1169008	96	GTG ...	VLK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1162515	102	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1167585	60	ATG ...	MEW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1638278	42	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
499551	54	TTG ...	LIG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
1161801	117	TTG ...	LWH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1166025	66	ATG ...	MIL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1163841	93	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1369469	57	CTG ...	LEK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1636978	33	ATG ...	MHN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1163937	39	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1366897	75	TTG ...	LCL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1161240	39	CTG ...	LTL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
1161837	36	GTG ...	VLK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
495026	93	TTG ...	LQI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, v6-5
108641	165	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1166767	279	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1643040	45	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1163643	90	GTG ...	VAM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1165887	267	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
738620	60	GTG ...	VNC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
95718	135	CTG ...	LDS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil, v6-5
1637247	39	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1165562	84	ATG ...	MKL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1163921	63	TTG ...	LLY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1168003	42	TTG ...	LKK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1640621	30	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1166156	69	CTG ...	LVT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
731464	33	TTG ...	LPV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
729240	63	TTG ...	LVN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
1636953	30	CTG ...	LRH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1167169	51	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
1162477	39	ATG ...	MQS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1167313	198	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
497886	60	ATG ...	MTL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell, v6-5
1165991	96	TTG ...	LLF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1163659	48	GTG ...	VDL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1366145	78	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1161938	33	CTG ...	LKR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
741340	30	ATG ...	MNV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1638076	42	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
50406	258	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis

Export data