Transcript 9365 | MetamORF

Transcript

ID CARD

MetamORF ID

9365

ENSMUST00000151997

Name

Top2a-206

Strand

Biotype

processed_transcript

Start-end positions

98999947-99001260

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:21973

Aliases

ENSMUSG00000020914,
MGI:98790, NCBI:21973, OFF:Top2a,
Top-2, Top2a

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
453231	108	ATG ...	MKK ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1078714	159	CTG ...	LHV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E
931538	57	ATT ...	IKA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
649729	96	ATG ...	MKK ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E
446514	60	CTG ...	LQP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
932893	57	CTG ...	LWK ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Neutrophil, R1E
1293999	141	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1293872	135	AAG ...	KKD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1079021	42	CTG ...	LAV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, R1E
649515	87	GTG ...	VTL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1079835	81	CTG ...	LKP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E
419818	132	AAG ...	KDE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
652657	66	GTG ...	VTL ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E
446856	48	CTG ...	LGR ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
8389	30	GTG ...	VVS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
9600	147	CTG ...	LTK ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
448489	33	ATG ...	MSC ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell
935679	51	AGG ...	RLG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
9407	123	CTG ...	LCK ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis
9364	156	CTG ...	LWY ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis
932598	102	AAG ...	KKM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1485396	30	GTG ...	VEG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, R1E
775943	51	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14

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