Transcript 315877

Transcript

ID CARD

MetamORF ID

315877

ENSMUST00000151880

Name

Slu7-205

Strand

Biotype

protein_coding

Start-end positions

43433744-43445385

CDS Start-stop positions

43437361-

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:193116

Aliases

AU018913,
D11Ertd730e, D3Bwg0878e, ENSMUSG00000020409,
MGI:2385598, NCBI:193116, OFF:Slu7,
Slu7

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
316075	99	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
1704608	69	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
296755	96	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
773288	33	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
656468	162	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
315876	117	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
770570	66	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	B_cell
318813	123	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
307074	114	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
657854	168	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
309016	120	GTG ...	VRM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, MEF
654827	153	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3

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