Transcript 4341 | MetamORF

Transcript

ID CARD

MetamORF ID

4341

ENSMUST00000151711

Name

Bccip-204

Strand

Biotype

processed_transcript

Start-end positions

133714742-133720941

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:66165

Aliases

1110013J05Rik,
Bccip, ENSMUSG00000030983, MGI:1913415,
NCBI:66165, OFF:Bccip, TOK-1

Chr 7

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1255802	141	AAG ...	KTC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1744949	39	ATG ...	MMK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
592877	36	TTG ...	LQM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, NSC, v6-5
1674153	39	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
72549	162	TTG ...	LKF ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
843340	162	CTG ...	LIS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
74828	120	CTG ...	LGG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Testis
229380	216	CTG ...	LSE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
219693	165	CTG ...	LLI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
75607	144	GTG ...	VQG ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
212454	69	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, v6-5
1672699	42	GTG ...	VMM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF
72204	78	TTG ...	LRT ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, Testis
1254853	105	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
228150	111	CTG ...	LDK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, v6-5
589700	51	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
78225	288	CTG ...	LLI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
223544	78	GTG ...	VGL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, v6-5
1673976	57	ATG ...	MFQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF
77403	285	CTG ...	LIS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
73341	162	TTG ...	LVL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Testis, v6-5
589419	30	ATG ...	MQR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, NSC, v6-5
229060	99	TTG ...	LND ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, Neutrophil, v6-5
4340	69	GTG ...	VMV ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Testis

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