Transcript 23341 | MetamORF

Transcript

ID CARD

MetamORF ID

23341

ENSMUST00000151586

Name

Polr2a-203

Strand

Biotype

processed_transcript

Start-end positions

69741625-69742571

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:20020

Aliases

220kDa,
ENSMUSG00000005198, MGI:98086, NCBI:20020,
OFF:Polr2a, Polr2a, Rpb1,
Rpo2-1

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295850	105	GTG ...	VVQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, v6-5
301511	177	CTG ...	LRR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil
933748	66	ATG ...	MLR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1341926	48	CTG ...	LEC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
297145	96	CTG ...	LRY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, v6-5
301205	141	GTG ...	VLS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
295547	144	GTG ...	VKY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, v6-5
303193	138	CTG ...	LSN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
311142	75	CTG ...	LAG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
304023	153	CTG ...	LVK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
304477	126	GTG ...	VRN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, v6-5
309307	45	CTG ...	LAT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
24058	300	CTG ...	LRY ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
295104	150	GTG ...	VMV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
23340	249	CTG ...	LAT ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
23755	279	CTG ...	LAG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
311514	171	CTG ...	LIK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5

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