Transcript 434831

Transcript

ID CARD

MetamORF ID

434831

ENSMUST00000151585

Name

Rcn2-204

Strand

Biotype

retained_intron

Start-end positions

56041870-56044226

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:26611

Aliases

AA408742,
ENSMUSG00000032320, MGI:1349765, NCBI:26611,
OFF:Rcn2, Rcn2, Tcbp49

Chr 9

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1524243	114	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	NSC
84418	108	GTG ...	VKQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1273983	84	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
6184	66	TTG ...	LQS ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
259500	90	CTG ...	LAP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, Spleen_B_cell
86125	198	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
86524	228	CTG ...	LGP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14
266563	42	TTG ...	LAT ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1270456	33	ACG ...	TTA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1271449	54	ATA ...	IKK ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
257957	57	ATG ...	MSM ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1524328	105	ATG ...	MLD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	NSC
84620	120	CTG ...	LWL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
86221	51	ATG ...	MLN ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
257823	294	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1268616	219	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
84247	114	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
86967	144	CTG ...	LHY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1272862	30	ACG ...	TIA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
268663	90	GTG ...	VCG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1269807	36	ACG ...	TKS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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