Transcript 1058609

Transcript

ID CARD

MetamORF ID

1058609

ENSMUST00000151346

Name

Macf1-215

Strand

Biotype

protein_coding

Start-end positions

123349716-123544831

CDS Start-stop positions

123350889-

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:11426

Aliases

ABP620,
Acf7, Aclp7, ENSMUSG00000028649,
MACF, Macf1, MGI:108559,
mKIAA0465, NCBI:11426, OFF:Macf1,
R74989

Chr 4

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1059387	30	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	Neutrophil
510795	45	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1177301	93	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	v6-5
1509557	39	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	NSC
550133	42	CTG ...	LWI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	NSC
1652086	54	TTG ...	LHN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
513336	39	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Neutrophil
1178180	75	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1657400	39	ATG ...	MIW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
554487	57	TTG ...	LWE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1508825	33	CTG ...	LVV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	NSC
888	90	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
545679	57	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	NSC
1654379	66	TTG ...	LHK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1654492	33	TTG ...	LPV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
1654998	42	GTG ...	VVT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	MEF
1508831	51	TTG ...	LKG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, NSC
1508602	45	ATG ...	MKL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	NSC
623	30	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
554088	75	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	NSC
1177384	36	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
553946	51	ATG ...	MII ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	MEF, NSC
1654961	33	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
546491	30	ATG ...	MKT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1656766	57	ATG ...	MKM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1508553	33	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	NSC
1656995	51	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
644	30	CTG ...	LTE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1656069	39	GTG ...	VTL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
550615	54	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	NSC
1508503	54	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF, NSC
553858	57	GTG ...	VGK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	MEF
1509138	33	TTG ...	LKH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	NSC
1177351	102	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
982	36	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1508924	48	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	NSC
147449	39	ATG ...	MIS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF

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