Transcript 343596

Transcript

ID CARD

MetamORF ID

343596

ENSMUST00000151285

Name

Wapl-204

Strand

Biotype

protein_coding

Start-end positions

34725990-34746219

CDS Start-stop positions

-34745690

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:218914

Aliases

A530089A20Rik,
BC037674, DIF-2, ENSMUSG00000041408,
FOE, MGI:2675859, NCBI:218914,
OFF:Wapl, Wapal, Wapl

Chr 14

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
465684	33	CTG ...	LYS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	E14, v6-5
1310102	33	ATG ...	MKN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1614682	42	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
1140393	42	CTG ...	LHE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1615014	69	ATG ...	MVQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
945884	51	AAG ...	KGI ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF	BMDC
1613058	39	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
1309092	135	ATG ...	MIR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1612415	105	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1138427	48	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
343595	36	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, MEF
1140899	63	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	v6-5
1613615	81	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
1140476	30	TTG ...	LGV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
1615143	66	GTG ...	VQR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1140045	42	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	v6-5
944574	153	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
1615141	126	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1349316	39	GTG ...	VCC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	E14, MEF
1306804	72	CTG ...	LMV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF

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