Transcript 371456

Transcript

ID CARD

MetamORF ID

371456

ENSMUST00000151046

Name

Bach1-202

Strand

Biotype

processed_transcript

Start-end positions

87698965-87732601

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:12013

Aliases

6230421P05Rik,
AI323795, Bach1, ENSMUSG00000025612,
MGI:894680, NCBI:12013, OFF:Bach1

Chr 16

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
696450	30	GTG ...	VTP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
1146405	63	GTG ...	VCG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
695591	129	GTG ...	VQE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
696404	60	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1186919	63	GTG ...	VSH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
697985	132	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
695499	45	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
371455	81	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
694548	45	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
694761	36	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1186864	294	AAG ...	KYS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
694510	78	ATG ...	MKQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1187305	291	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
373910	78	TTG ...	LEP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
692863	60	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
693893	66	ATG ...	MTV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
694440	84	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1186820	189	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
853607	96	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
475902	51	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
695683	69	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1147492	33	TTG ...	LTK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
793524	84	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1147668	69	GTG ...	VQV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5

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