Transcript 55642 | MetamORF

Transcript

ID CARD

MetamORF ID

55642

ENSMUST00000150958

Name

Espn-218

Strand

Biotype

processed_transcript

Start-end positions

152120882-152132337

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:56226

Aliases

ENSMUSG00000028943,
Espn, je, MGI:1861630,
NCBI:56226, OFF:Espn

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
57558	165	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58700	102	GTG ...	VMV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
57410	228	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
55868	210	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58634	84	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
56554	195	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56776	39	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59181	108	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58283	99	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
55641	177	GTG ...	VHN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56489	240	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58864	213	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
56173	84	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
57191	288	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
55935	117	GTG ...	VWC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
56867	135	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58106	210	CTG ...	LSH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
59162	144	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
58049	183	CTG ...	LRH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
56994	30	GTG ...	VIT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
58796	123	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
57165	291	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58464	96	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
57931	69	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58853	54	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58376	171	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
59238	87	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
61234	207	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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