Transcript 94093 | MetamORF

Transcript

ID CARD

MetamORF ID

94093

ENSMUST00000150789

Name

Ralgapb-207

Strand

Biotype

retained_intron

Start-end positions

158409876-158428052

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:228850

Aliases

AI507211,
B230339M05Rik, ENSMUSG00000027652, MGI:2444531,
NCBI:228850, OFF:Ralgapb, p170,
Ralgapb

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
112883	42	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
105465	72	ATG ...	MDH ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
44015	102	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
94092	54	TTG ...	LLW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
117054	99	GTG ...	VNV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
105060	102	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
95563	159	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
95226	54	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
114951	81	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
115879	189	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
106868	51	TTG ...	LGE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
48704	93	CTG ...	LGE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
100930	174	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
103513	33	ATG ...	MQW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
105117	105	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
112618	57	TTG ...	LDS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
111456	111	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
94176	33	GTG ...	VAV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
102293	96	GTG ...	VIK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
110700	192	TTG ...	LVI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
111260	123	GTG ...	VAN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
116778	99	TTG ...	LPK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
103681	78	GTG ...	VCY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
94571	198	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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