Transcript 30628 | MetamORF

Transcript

ID CARD

MetamORF ID

30628

ENSMUST00000150767

Name

Cerk-202

Strand

Biotype

retained_intron

Start-end positions

86139128-86159468

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:223753

Aliases

AI848610,
Cerk, D330016D08Rik, ENSMUSG00000035891,
MGI:2386052, mKIAA1646, NCBI:223753,
OFF:Cerk

Chr 15

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
471273	42	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
31659	39	GTG ...	VGT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
32595	39	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
360513	63	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
30627	153	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
31820	195	GTG ...	VCV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
471960	69	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
31543	42	CTG ...	LVR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
360614	69	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
32606	159	CTG ...	LHG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1180445	69	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
30855	57	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
949232	84	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
31083	162	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32253	81	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
31818	150	GTG ...	VIG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
31653	108	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, Testis
361525	33	CTG ...	LYG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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