Transcript 13932 | MetamORF

Transcript

ID CARD

MetamORF ID

13932

ENSMUST00000150707

Name

Ide-203

Strand

Biotype

processed_transcript

Start-end positions

37303346-37313573

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:15925

Aliases

1300012G03Rik,
4833415K22Rik, AA675336, AI507533,
ENSMUSG00000056999, Ide, MGI:96412,
NCBI:15925, OFF:Ide

Chr 19

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14241	87	TTG ...	LNA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Skin_tumor
14641	213	GTG ...	VLT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
13944	57	TTG ...	LFI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
13931	51	ATG ...	MEC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
1205297	168	ATA ...	IDM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
14277	147	TTG ...	LCF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
43535	171	TTG ...	LID ...	Ribo-seq	TTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
13940	84	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
14323	123	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Skin_tumor
14272	51	ATG ...	MEH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Skin_tumor
14746	48	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1205396	258	ACG ...	TSK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
14395	72	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
43651	126	GTG ...	VAI ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
43191	192	TTG ...	LEE ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
43201	162	ATG ...	MVL ...	Predicted Ribo-seq	ATG		12	sORFs_org_Mouse Mackowiak2015	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1869984	60	ATG ...	MEH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
14541	78	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
14136	90	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Skin_tumor
14176	36	CTG ...	LNI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Skin_tumor
14268	69	TTG ...	LEE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Skin_tumor, Testis
14696	36	GTG ...	VQG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
14535	108	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
14547	39	ATG ...	MVL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, NSC, R1E, Skin_tumor, Testis
14194	48	TTG ...	LID ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, Skin_tumor, Testis
14653	93	TTG ...	LKG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	R1E, Skin_tumor, v6-5
14440	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
14590	72	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Skin_tumor
14687	81	CTG ...	LTA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, Skin_tumor

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