Transcript 292460

Transcript

ID CARD

MetamORF ID

292460

ENSMUST00000150516

Name

Nsf-210

Strand

Biotype

retained_intron

Start-end positions

103861639-103872322

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:18195

Aliases

AI316878,
AU020090, AU067812, ENSMUSG00000034187,
MGI:104560, NCBI:18195, Nsf,
OFF:Nsf, SKD2

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
304075	33	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, v6-5
306005	108	GTG ...	VET ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, v6-5
292459	129	GTG ...	VDI ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, v6-5
303912	114	CTG ...	LAV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, v6-5
1289406	120	AAG ...	KEL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
301866	69	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
773793	42	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
651689	45	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1124991	72	CTG ...	LWR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
641652	51	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
309356	75	CTG ...	LQV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, v6-5
1286339	57	AGG ...	RAP ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
647497	69	ATG ...	MTE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
300462	93	ATG ...	MWT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
1285048	99	AAG ...	KNF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
312237	99	CTG ...	LQM ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, v6-5
995137	78	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
995133	69	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
301467	84	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
301478	141	CTG ...	LSA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, v6-5
305960	39	TTG ...	LAP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5

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