Metam
ORF

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Transcript

ID CARD

MetamORF ID

54165

ID

ENSMUST00000150210

Name

Nmd3-207

Strand

+

Biotype

retained_intron

Start-end positions

69746432-69749042

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

GGG ...

Gene

ID

NCBI:97112

Aliases

C87860,
ENSMUSG00000027787, MGI:2140103, NCBI:97112,
Nmd3, OFF:Nmd3


Chr 3

ORFs

28 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

537129 78

TTG ...

LKI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
R1E
1222181 51

AAG ...

KTF ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1222071 108

TTG ...

LQE ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
507338 117

GTG ...

VES ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
R1E, Spleen_B_cell, v6-5
296 51

CTG ...

LET ...

Ribo-seq
CTG strong 8 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14, MEF,
NSC, R1E, v6-5
1220431 42

ATA ...

IFL ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1223039 114

AAG ...

KSL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
747275 30

ATG ...

MPL ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Intronic
    sORF
E14, R1E, v6-5
52203 90

ATG ...

MKE ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
v6-5
502771 111

CTG ...

LWK ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
1221215 105

CTG ...

LKE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF
54002 102

GTG ...

VTQ ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
R1E, v6-5
16834 42

ATG ...

MTA ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
MEF, R1E
1220705 153

AAG ...

KKS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1218833 87

AAG ...

KIF ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
52048 93

ATG ...

MMK ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
v6-5
1221171 30

AAG ...

KRQ ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
504697 123

ATG ...

MQP ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, NSC,
R1E, v6-5
1220341 123

ATC ...

IPV ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Intronic
    sORF
E14
52893 54

TTG ...

LKT ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
v6-5
54423 63

CTG ...

LRC ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, R1E,
v6-5
1056576 75

CTG ...

LAE ...

Ribo-seq
CTG strong 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
R1E, v6-5
1222964 75

AAG ...

KIL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
818324 60

ATG ...

MRQ ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1221368 81

ATT ...

ISL ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Intronic
    sORF
E14
1223037 66

AAG ...

KKM ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Intronic
    sORF
E14
820156 69

TTG ...

LKK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Intronic
    sORF
R1E
54164 162

GTG ...

VLI ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
R1E, Testis

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5