Transcript 1099 | MetamORF

Transcript

ID CARD

MetamORF ID

1099

ENSMUST00000150077

Name

Capzb-210

Strand

Biotype

processed_transcript

Start-end positions

139192969-139291814

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:12345

Aliases

1700120C01Rik,
AI325129, Cappb1, Capzb,
CPB1, CPB2, CPbeat2,
CPbeta1, CPbeta2, ENSMUSG00000028745,
MGI:104652, NCBI:12345, OFF:Capzb

Chr 4

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
155381	33	TTG ...	LEK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
824209	153	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
1464773	105	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
825192	54	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
414321	288	AAG ...	KNL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12
60482	228	GTG ...	VSD ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis
60202	207	ATG ...	MGP ...	Ribo-seq	ATG		18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
822937	48	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
160464	33	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
1466208	48	TTG ...	LSH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
157285	36	CTG ...	LVE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
824361	36	ATG ...	MYL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
511113	63	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
60335	189	CTG ...	LVE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, NSC, Testis
60692	264	CTG ...	LVP ...	Ribo-seq	CTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
149879	84	GTG ...	VQT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
59653	273	CTG ...	LID ...	Ribo-seq	CTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
60021	225	ATG ...	MTL ...	Ribo-seq	ATG		20	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
822643	60	TTG ...	LKV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
61083	186	GTG ...	VED ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, NSC, Testis
147036	60	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
148154	54	CTG ...	LNE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
156060	42	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
793	45	ATG ...	MRS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
825016	57	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
823425	87	TTG ...	LED ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
157048	54	TTG ...	LQT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
821897	141	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
1232500	294	ATT ...	IEK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
824810	78	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC
1098	81	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
148584	66	CTG ...	LCR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
147153	33	GTG ...	VEA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
149092	63	TTG ...	LQR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain

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