Transcript 47562 | MetamORF

Transcript

ID CARD

MetamORF ID

47562

ENSMUST00000150039

Name

Top1-204

Strand

Biotype

retained_intron

Start-end positions

160717469-160721384

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:21969

Aliases

AI467334,
D130064I21Rik, ENSMUSG00000070544, MGI:98788,
NCBI:21969, OFF:Top1, Top-1,
Top1

Chr 2

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
967034	138	AAG ...	KKA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
969584	81	AGG ...	RRT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
969451	87	ATC ...	IER ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
47949	87	CTG ...	LKS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Testis
968187	39	ATC ...	IWT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
964797	102	AAG ...	KFK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
48955	54	TTG ...	LGT ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Spleen_B_cell, Testis
49241	99	CTG ...	LEV ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, Spleen_B_cell, Testis
47918	108	TTG ...	LMK ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, Spleen_B_cell, Testis
95110	150	CTG ...	LPF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Spleen_B_cell
15390	66	TTG ...	LPW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
968529	96	AAG ...	KPQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
47561	30	CTG ...	LDP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell, Testis
109587	156	ATG ...	MIL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
967032	48	AAG ...	KSM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC

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