Transcript 847344

Transcript

ID CARD

MetamORF ID

847344

ENSMUST00000150013

Name

Fbp1-203

Strand

Biotype

protein_coding

Start-end positions

62864766-62872758

CDS Start-stop positions

62864976-

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:14121

Aliases

ENSMUSG00000069805,
Fbp-2, Fbp1, Fbp2,
Fbp3, MGI:95492, NCBI:14121,
OFF:Fbp1

Chr 13

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
847395	33	GTG ...	VVS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Liver
848289	60	GTG ...	VVS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver
848092	63	GTG ...	VPP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Liver
847816	126	GTG ...	VQP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	Liver
847437	54	ATG ...	MSW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	Liver
848020	42	TTG ...	LCP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver
847420	69	TTG ...	LMA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	Liver
848304	237	CTG ...	LNW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
847905	69	ATG ...	MAV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
993005	60	TTG ...	LWC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
847919	135	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848627	57	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Liver
847479	66	ATG ...	MAH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848428	144	ATG ...	MLC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848576	105	ATG ...	MRS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848333	96	ATG ...	MAV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848436	267	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
848324	219	TTG ...	LTA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver
848343	234	ATG ...	MAH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848147	93	CTG ...	LKM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
847796	30	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Liver
848376	162	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848505	165	CTG ...	LMS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Liver
848419	72	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver
848212	237	TTG ...	LMA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	Liver
848588	210	TTG ...	LCP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver
847677	117	ATG ...	MLC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
848205	90	GTG ...	VPP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Liver
848292	153	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Liver
847833	87	ATG ...	MCR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
847886	45	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver
848371	282	TTG ...	LRT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
848114	36	GTG ...	VGS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Liver
847393	126	CTG ...	LRR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Liver
847757	138	CTG ...	LMS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Liver
847343	78	ATG ...	MRS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver
847898	51	TTG ...	LTA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver

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