Transcript 167927

Transcript

ID CARD

MetamORF ID

167927

ENSMUST00000149886

Name

Letm1-204

Strand

Biotype

retained_intron

Start-end positions

33742534-33753562

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:56384

Aliases

ENSMUSG00000005299,
Letm1, MGI:1932557, NCBI:56384,
OFF:Letm1

Chr 5

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
179334	156	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
169651	84	CTG ...	LTK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, Spleen_B_cell
178404	51	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
518836	114	CTG ...	LSK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, Spleen_B_cell
169665	144	GTG ...	VKV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
175177	84	CTG ...	LQE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
174620	111	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
175724	96	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
176502	78	GTG ...	VKR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
522733	48	ATG ...	MII ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
522345	72	CTG ...	LIT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
167926	60	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
185254	138	GTG ...	VAE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
520851	33	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Liver, R1E, Spleen_B_cell
1434692	144	CTG ...	LHH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
172171	120	TTG ...	LLI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
519773	42	CTG ...	LQR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1432553	57	CTG ...	LLK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
175751	54	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
185109	63	CTG ...	LEL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
174724	105	CTG ...	LQE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, Spleen_B_cell
177280	129	GTG ...	VEG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
183692	102	GTG ...	VQQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E, Spleen_B_cell
169850	42	GTG ...	VTP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
1432284	150	TTG ...	LHL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver, R1E

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