Transcript 57026 | MetamORF

Transcript

ID CARD

MetamORF ID

57026

ENSMUST00000149366

Name

Ndc1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

107367915-107416323

CDS Start-stop positions

107368089-107395771

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:72787

Aliases

2810475A17Rik,
AI450313, ENSMUSG00000028614, MGI:1920037,
NCBI:72787, Ndc1, OFF:Ndc1,
sks, Tmem48

Chr 4

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1377063	90	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
546589	192	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
153993	51	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
153576	42	TTG ...	LDC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
160485	144	CTG ...	LPH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, R1E, Spleen_B_cell
1177338	60	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
58082	39	GTG ...	VEP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Testis
1230242	60	ATT ...	ICF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
154475	210	CTG ...	LFS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
547408	51	TTG ...	LSK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
58387	105	GTG ...	VAW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, R1E, Testis
550605	153	TTG ...	LIE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
547927	39	GTG ...	VLI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, R1E
148700	147	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
550664	60	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
59240	204	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, Testis
58994	96	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Testis
152888	147	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E
552787	39	CTG ...	LFF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
509462	63	GTG ...	VCG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
155464	234	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
149965	60	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E
58331	174	CTG ...	LIA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
159305	60	GTG ...	VQA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, Spleen_B_cell
553481	69	CTG ...	LHH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
57025	180	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
57945	126	TTG ...	LNL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Testis
549865	93	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
1377340	63	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
160254	78	TTG ...	LRF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, R1E, Spleen_B_cell
146213	123	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
546967	141	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
149874	117	TTG ...	LED ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, R1E
150448	54	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
511790	99	GTG ...	VDT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, R1E, Spleen_B_cell
58068	129	TTG ...	LGW ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Brain, R1E, Testis
58693	159	CTG ...	LHP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
551109	54	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
149344	54	CTG ...	LKT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, R1E, Spleen_B_cell
1884717	129	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
158508	57	CTG ...	LQF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Spleen_B_cell
1059848	78	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
550962	42	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1507936	66	TTG ...	LVC ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
548684	36	CTG ...	LIM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
57644	90	GTG ...	VLL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, R1E, Testis

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