Transcript 515327

Transcript

ID CARD

MetamORF ID

515327

ENSMUST00000149301

Name

AI314180-209

Strand

Biotype

protein_coding

Start-end positions

58811431-58911930

CDS Start-stop positions

-58905025

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:230249

Aliases

AI314180,
AW558785, BB181316, Ecpas,
ENSMUSG00000050812, MGI:2140220, mKIAA0368,
NCBI:230249, OFF:Ecpas

Chr 4

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
555327	99	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
899899	36	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
158367	102	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
511872	30	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
1735118	54	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
549387	81	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
157657	39	ATG ...	MNK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
552550	78	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF
897230	153	AAG ...	KCR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
1652201	39	ATG ...	MMD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
1657310	36	ATG ...	MDF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	MEF
558144	75	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
516329	72	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
547860	51	ATG ...	MSW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
515326	75	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
1231068	108	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
558356	120	TTG ...	LFQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
1658462	45	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
545180	63	TTG ...	LGW ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	MEF

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