Transcript 57009 | MetamORF

Transcript

ID CARD

MetamORF ID

57009

ENSMUST00000148774

Name

Prpf4-202

Strand

Biotype

processed_transcript

Start-end positions

62421844-62423331

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:70052

Aliases

1600015H11Rik,
AI874830, AW047464, bN189G18.1,
ENSMUSG00000066148, MGI:1917302, NCBI:70052,
OFF:Prpf4, Prpf4

Chr 4

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1230930	192	ATC ...	IHG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1231532	33	ATC ...	IYG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1225423	129	AGG ...	RLK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1058769	30	ATG ...	MTV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
545552	90	TTG ...	LPL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
158267	108	GTG ...	VWD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
510562	54	CTG ...	LEG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
1230545	141	ATT ...	IAT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
512762	72	ATG ...	MAL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, Spleen_B_cell
1885550	33	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1228501	81	ATC ...	ILH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
550998	54	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1887798	48	CTG ...	LDP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1228840	63	ATT ...	IMF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
58602	108	CTG ...	LDA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Neutrophil, R1E, Spleen_B_cell, Testis
549285	60	TTG ...	LAG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
59121	51	GTG ...	VYD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Neutrophil, R1E, Spleen_B_cell, Testis
545990	48	ATG ...	MTI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
553159	66	ATG ...	MHL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
511966	75	GTG ...	VTT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
545918	75	ATG ...	MGT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E
57008	78	CTG ...	LHQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Neutrophil, R1E, Spleen_B_cell, Testis
545038	87	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
549060	75	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
511328	42	CTG ...	LKE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, R1E, Spleen_B_cell
552233	54	GTG ...	VPM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
510741	63	ATG ...	MGF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, R1E, Spleen_B_cell
1227527	123	AAG ...	KRR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14

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