Transcript 43841 | MetamORF

Transcript

ID CARD

MetamORF ID

43841

ENSMUST00000148717

Name

Zdhhc12-204

Strand

Biotype

processed_transcript

Start-end positions

30090944-30093019

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:66220

Aliases

1190004A01Rik,
ENSMUSG00000015335, MGI:1913470, NCBI:66220,
OFF:Zdhhc12, Zdhhc12

Chr 2

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43872	213	CTG ...	LAS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
47469	117	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
1211867	147	ATC ...	IAY ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1209315	129	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
45156	87	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
45003	141	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
47709	291	CTG ...	LWL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
48186	195	CTG ...	LVA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
47594	120	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
46882	147	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1213522	186	AGG ...	RNT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
45904	102	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
965410	180	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
43840	93	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
47589	126	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1213846	36	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
44774	228	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
45301	105	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
48623	252	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
45090	219	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
46682	267	CTG ...	LFT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
46332	90	CTG ...	LAH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
44999	249	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis

Export data