Transcript 370306

Transcript

ID CARD

MetamORF ID

370306

ENSMUST00000148679

Name

Abcf3-203

Strand

Biotype

retained_intron

Start-end positions

20559657-20560818

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

NCBI:27406

Aliases

Abcf3,
AI326318, AU016058, BB119416,
ENSMUSG00000003234, MGI:1351656, NCBI:27406,
OFF:Abcf3

Chr 16

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
373221	96	GTG ...	VCE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
694446	60	CTG ...	LEN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
372249	114	GTG ...	VCK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
373985	102	CTG ...	LWV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
695801	69	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
35069	108	TTG ...	LGR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
35116	81	CTG ...	LAM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
370305	147	CTG ...	LVS ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E, v6-5
374035	105	CTG ...	LDE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
695267	102	CTG ...	LKR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
697435	39	TTG ...	LKL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, v6-5
34612	84	GTG ...	VEQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
34021	69	TTG ...	LNV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
372921	117	CTG ...	LVC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
372718	72	ATG ...	MNP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, v6-5

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